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Developers · CLI

CLI

Everything the platform does, scriptable — including offline verification that needs no account at all.

CLI
$ genomarker validate analysis.json   # rules before compute
$ genomarker run analysis.json        # execute with assurance
$ genomarker inspect GM-2026-08-14-8F29E1
$ genomarker verify analysis.gmk      # offline — no app required
$ genomarker replay analysis.gmk      # reconstruct + re-execute

MCP surface — assurance only

MCP tools
list_analysis_types
get_analysis_schema
list_assurance_profiles
validate_analysis_spec
submit_analysis · get_result
get_assurance_findings
get_evidence · verify_evidence
replay_evidence
get_sap · validate_against_sap

Deliberately narrow. Genomarker’s job is to assure computation — agents can gather scientific context elsewhere.

Actor provenance

Actor provenance JSON
{
  "actor_type": "agent",
  "interface": "mcp",
  "client": "helix-sci-agent",
  "model": "optional-identifier"
}