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Developers · Python SDK

Python SDK

The SDK wraps the REST API with canonical spec construction and local verification.

Python SDK
pip install genomarker

result = genomarker.run(
    analysis="differential_expression",
    spec=spec,
    assurance_profile="GM-BIOMARKER-DE-1",
    idempotency_key="trial-042-de-v3")

result.findings · result.evidence_id
result.replay.outcome · result.preservation.grade

MCP surface — assurance only

MCP tools
list_analysis_types
get_analysis_schema
list_assurance_profiles
validate_analysis_spec
submit_analysis · get_result
get_assurance_findings
get_evidence · verify_evidence
replay_evidence
get_sap · validate_against_sap

Deliberately narrow. Genomarker’s job is to assure computation — agents can gather scientific context elsewhere.

Actor provenance

Actor provenance JSON
{
  "actor_type": "agent",
  "interface": "mcp",
  "client": "helix-sci-agent",
  "model": "optional-identifier"
}